- Class: 1
- Architecture: 1.10:Orthogonal Bundle
- Topology: 1.10.4080:ADP-ribosylglycohydrolase fold
- Homology: 1.10.4080.10:ADP-ribosylation/Crystallin J1
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1t5j | [A] | [A] | [A] | 2.7 | MG:MAGNESIUM ION | |||
2cwc | [A] | [A] | [A] | 1.65 | ||||
2foz | [A] | [A] | [A] | 1.6 | MG:MAGNESIUM ION | |||
2fp0 | [A] | [A] | [A] | 2.05 | MG:MAGNESIUM ION | |||
2g4k | [A] | [A] | [A] | 1.82 | CL:CHLORIDE ION MG:MAGNESIUM ION | |||
2qty | [A] | [A] | [A] | 1.8 | MG:MAGNESIUM ION | |||
2woc | [A] | [A] | [A] | 2.2 | CL:CHLORIDE ION FMT:FORMIC ACID GOL:GLYCEROL MN:MANGANESE (II) ION | |||
2wod | [A] | [A] | [A] | 2.25 | CL:CHLORIDE ION GOL:GLYCEROL MN:MANGANESE (II) ION ZZC:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [[(2R,3R)-2,3-DIHYDROXY-4-OXO-PENTOXY]-OXIDO-PHOSPHORYL] PHOSPHATE | |||
2woe | [A] | [A] | [A] | 1.9 | AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE GOL:GLYCEROL MN:MANGANESE (II) ION TLA:L(+)-TARTARIC ACID | |||
2yzv | [A] | [A] | [A] | 1.6 | MG:MAGNESIUM ION | |||
2yzw | [A] | [A] | [A] | 1.7 | GD3:GADOLINIUM ION | |||
3g9d | [A] | [A] | [A] | 2.5 | MG:MAGNESIUM ION | |||
3hfw | [A] | [A] | [A] | 1.92 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE CL:CHLORIDE ION K:POTASSIUM ION MG:MAGNESIUM ION | |||
3o5t | [A3B3] | [A3B3] | [A3B3] | 2.09 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION | |||
5ovo | [A3B3] | [A3B3] | [A3B3] | 1.55 | ADP:ADENOSINE-5___sq___-DIPHOSPHATE MG:MAGNESIUM ION MN:MANGANESE (II) ION | |||
5zqy | [A] | [A] | [A] | 1.58 | AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE MG:MAGNESIUM ION | |||
6d36 | [A] | [A] | [A] | 1.7 | AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE MG:MAGNESIUM ION | |||
6d3a | [A] | [A] | [A] | 1.6 | AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE MG:MAGNESIUM ION | |||
6g1p | [A] | [A] | [A] | 1.55 | ACT:ACETATE ION CIT:CITRIC ACID GOL:GLYCEROL MG:MAGNESIUM ION | |||
6g1q | [A] | [A] | [A] | 2.1 | AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE MG:MAGNESIUM ION | |||
6g28 | [A] | [A] | [A] | 1.23 | AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE CL:CHLORIDE ION MG:MAGNESIUM ION | |||
6g2a | [A] | [A] | [A] | 1.8 | A3R:ADENOSINE DIPHOSPHATE (HYDROXYMETHYL)PYRROLIDINEMONOALCOHOL ACT:ACETATE ION CL:CHLORIDE ION MG:MAGNESIUM ION | |||
6hgz | [A] | [A] | [A] | 1.86 | AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGENPHOSPHATE GOL:GLYCEROL MG:MAGNESIUM ION | |||
6hh3 | [A] | [A] | [A] | 1.82 | A1R:5___sq___-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE GOL:GLYCEROL MG:MAGNESIUM ION | |||
6hh4 | [A] | [A] | [A] | 1.66 | ACT:ACETATE ION F2R:ADP-RIBOSYL-L-ARGININE GOL:GLYCEROL MG:MAGNESIUM ION | |||
6hh5 | [A] | [A] | [A] | 1.95 | A3R:ADENOSINE DIPHOSPHATE (HYDROXYMETHYL)PYRROLIDINEMONOALCOHOL GOL:GLYCEROL MG:MAGNESIUM ION | |||
6hoz | [A] | [A] | [A] | 1.77 | ACT:ACETATE ION GOL:GLYCEROL MG:MAGNESIUM ION R5I:INOSINE DIPHOSPHATE RIBOSE R7I:INOSINE DIPHOSPHATE RIBOSE |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA